| Team Ranking | Overall | Rushing | Passing |
| Offense | 11th | 155.7 (4th) | 206.1 (23rd) |
| Defense | 3rd | 94.2 (4th) | 200.2 (4th) |
| Power Rankings | ||||
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| Date | Ranking | Previous |
| 05/21/2013 | 2 | 2 |
| It's all about the quarterback. Does Colin Kaepernick build off of what he did last season? It was only 10 starts. | ||
| 03/26/2013 | 2 | 3 |
| They haven't done much in free agency, but they do have 14 draft picks. They will be just fine. | ||
| 02/05/2013 | 3 | 4 |
| They have their franchise quarterback in Colin Kaepernick. Now it's time to let him play quarterback. He's a passer. | ||
| 01/02/2013 | 4 | 6 |
| They got the passing game cranked up against Arizona. That will be key come playoff time. | ||
| 12/25/2012 | 6 | 3 |
| There are now major issues about the quarterback change. Was it arrogance? | ||
| 12/18/2012 | 3 | 5 |
| That was an impressive first half at New England. The second? Not so much. | ||
| 12/11/2012 | 5 | 6 |
| They have a big two weeks ahead at New England and at Seattle. The division title is still up for grabs. | ||
| 12/04/2012 | 6 | 3 |
| The move to Colin Kaepernick was a risky one, and it didn't pay off in St. Louis. There is still a chance they might not win the division. | ||
| 11/27/2012 | 3 | 3 |
| With the defense scoring two touchdowns the way it did at New Orleans, does it matter who plays quarterback? It will down the road. | ||
| 11/20/2012 | 3 | 4 |
| That was an impressive butt-whipping against the Bears. Colin Kaepernick looked like the real deal. But this is Alex Smith's team this season. | ||
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