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Thomas (knee) ran the bases Wednesday, Mark Zuckerman of MASNSports.com reports.

Thomas is running again for the first time since being diagnosed with a Grade 2 MCL sprain in his left knee three weeks ago. Zuckerman notes that Thomas wasn't running at full effort but seemed to be moving at close to 100 percent speed. Running the bases is typically one of the last steps a player coming back from a knee injury takes before embarking on a rehab assignment, though it's not yet clear when Thomas might report to a minor-league affiliate for game action.

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